Jagpreet Singh, T. Dutta, Ki‐Hyun Kim et al.

Journal of Nanobiotechnology • 2018

AbstractIn materials science, “green” synthesis has gained extensive attention as a reliable, sustainable, and eco-friendly protocol for synthesizing a wide range of materials/nanomaterials including metal/metal oxides nanomaterials, hybrid materials, and bioinspired materials. As such, green synthesis is regarded as an important tool to reduce the destructive effects associated with the traditional methods of synthesis for nanoparticles commonly utilized in laboratory and industry. In this review, we summarized the fundamental processes and mechanisms of “green” synthesis approaches, especially for metal and metal oxide [e.g., gold (Au), silver (Ag), copper oxide (CuO), and zinc oxide (ZnO)] nanoparticles using natural extracts. Importantly, we explored the role of biological components, essential phytochemicals (e.g., flavonoids, alkaloids, terpenoids, amides, and aldehydes) as reducing agents and solvent systems. The stability/toxicity of nanoparticles and the associated surface engineering techniques for achieving biocompatibility are also discussed. Finally, we covered applications of such synthesized products to environmental remediation in terms of antimicrobial activity, catalytic activity, removal of pollutants dyes, and heavy metal ion sensing.

Leilei Xiang, Jean Damascene Harindintwali, Fang Wang et al.

Environmental Science & Technology • 2022

The contamination of soil with organic pollutants has been accelerated by agricultural and industrial development and poses a major threat to global ecosystems and human health. Various chemical and physical techniques have been developed to remediate soils contaminated with organic pollutants, but challenges related to cost, efficacy, and toxic byproducts often limit their sustainability. Fortunately, phytoremediation, achieved through the use of plants and associated microbiomes, has shown great promise for tackling environmental pollution; this technology has been tested both in the laboratory and in the field. Plant–microbe interactions further promote the efficacy of phytoremediation, with plant growth-promoting bacteria (PGPB) often used to assist the remediation of organic pollutants. However, the efficiency of microbe-assisted phytoremediation can be impeded by (i) high concentrations of secondary toxins, (ii) the absence of a suitable sink for these toxins, (iii) nutrient limitations, (iv) the lack of continued release of microbial inocula, and (v) the lack of shelter or porous habitats for planktonic organisms. In this regard, biochar affords unparalleled positive attributes that make it a suitable bacterial carrier and soil health enhancer. We propose that several barriers can be overcome by integrating plants, PGPB, and biochar for the remediation of organic pollutants in soil. Here, we explore the mechanisms by which biochar and PGPB can assist plants in the remediation of organic pollutants in soils, and thereby improve soil health. We analyze the cost-effectiveness, feasibility, life cycle, and practicality of this integration for sustainable restoration and management of soil.

Mengyuan Jiang, Lizhi He, N. Niazi et al.

Biochar • 2023

Although research on biochar has received increasing attention for environmental and agricultural applications, the significance of nanobiochar for environmental pollutant  remediation is poorly understood. In contrast to bulk biochar, nanobiochar has superior physicochemical properties such as high catalytic activity, unique nanostructure, large specific surface area and high mobility in the soil environment. These unique characteristics make nanobiochar an ideal candidate for pollution remediation. Thus far, the research on nanobiochar is still in its infancy and most of the previous studies have only been  conducted for exploring its properties and environmental functions. The lack of in-depth summary of nanobiochar’s research direction makes it a challenge for scientists and researchers globally. Hence in this review, we established some key fabrication methods for nanobiochar with a focus on its performance for the removal of pollutants from the environment. We also provided up-to-date information on nanobiochar’s role in environmental remediation and insights into different mechanisms involved in the pollutant removal. Although, nanobiochar application is increasing, the associated drawbacks to the soil ecosystem have not received enough research attention. Therefore, further research is warranted to evaluate the potential environmental risks of nanobiochar before large scale application. Graphical Abstract Key synthesis technologies and properties of nanobiochars were discussed. The interactions pathways of nanobiochar with pollutants were elucidated. Role of environmental factors on pollutants remediation and life cycle was delineated. Important research outlooks on nanobiochar’s potential in pollutant remediation were elaborated.

A. Osman, Samer Fawzy, Mohamed Farghali et al.

Environmental Chemistry Letters • 2022

In the context of climate change and the circular economy, biochar has recently found many applications in various sectors as a versatile and recycled material. Here, we review application of biochar-based for carbon sink, covering agronomy, animal farming, anaerobic digestion, composting, environmental remediation, construction, and energy storage. The ultimate storage reservoirs for biochar are soils, civil infrastructure, and landfills. Biochar-based fertilisers, which combine traditional fertilisers with biochar as a nutrient carrier, are promising in agronomy. The use of biochar as a feed additive for animals shows benefits in terms of animal growth, gut microbiota, reduced enteric methane production, egg yield, and endo-toxicant mitigation. Biochar enhances anaerobic digestion operations, primarily for biogas generation and upgrading, performance and sustainability, and the mitigation of inhibitory impurities. In composts, biochar controls the release of greenhouse gases and enhances microbial activity. Co-composted biochar improves soil properties and enhances crop productivity. Pristine and engineered biochar can also be employed for water and soil remediation to remove pollutants. In construction, biochar can be added to cement or asphalt, thus conferring structural and functional advantages. Incorporating biochar in biocomposites improves insulation, electromagnetic radiation protection and moisture control. Finally, synthesising biochar-based materials for energy storage applications requires additional functionalisation.

R. Wuana, F. Okieimen

ISRN Ecology • 2011

Scattered literature is harnessed to critically review the possible sources, chemistry, potential biohazards and best available remedial strategies for a number of heavy metals (lead, chromium, arsenic, zinc, cadmium, copper, mercury and nickel) commonly found in contaminated soils. The principles, advantages and disadvantages of immobilization, soil washing and phytoremediation techniques which are frequently listed among the best demonstrated available technologies for cleaning up heavy metal contaminated sites are presented. Remediation of heavy metal contaminated soils is necessary to reduce the associated risks, make the land resource available for agricultural production, enhance food security and scale down land tenure problems arising from changes in the land use pattern.

Zarifeh Raji, A. Karim, Antoine Karam et al.

Waste • 2023

Heavy metal contamination in wastewater is a significant concern for human health and the environment, prompting increased efforts to develop efficient and sustainable removal methods. Despite significant efforts in the last few decades, further research initiatives remain vital to comprehensively address the long-term performance and practical scalability of various adsorption methods and adsorbents for heavy metal remediation. This article aims to provide an overview of the mechanisms, kinetics, and applications of diverse adsorbents in remediating heavy metal-contaminated effluents. Physical and chemical processes, including ion exchange, complexation, electrostatic attraction, and surface precipitation, play essential roles in heavy metal adsorption. The kinetics of adsorption, influenced by factors such as contact time, temperature, and concentration, directly impact the rate and effectiveness of metal removal. This review presents an exhaustive analysis of the various adsorbents, categorized as activated carbon, biological adsorbents, agricultural waste-based materials, and nanomaterials, which possess distinct advantages and disadvantages that are linked to their surface area, porosity, surface chemistry, and metal ion concentration. To overcome challenges posed by heavy metal contamination, additional research is necessary to optimize adsorbent performance, explore novel materials, and devise cost-effective and sustainable solutions. This comprehensive overview of adsorption mechanisms, kinetics, and diverse adsorbents lays the foundation for further research and innovation in designing optimized adsorption systems and discovering new materials for sustainable heavy metal remediation in wastewater.

Y. Wan, Jiang Liu, Zhuang Zhong et al.

Toxics • 2024

Soil heavy metal pollution is a global environmental challenge, posing significant threats to eco-environment, agricultural development, and human health. In recent years, advanced and effective remediation strategies for heavy metal-contaminated soils have developed rapidly, and a systematical summarization of this progress is important. In this review paper, first, the anthropogenic sources of heavy metals in agricultural soils, including atmospheric deposition, animal manure, mineral fertilizers, and pesticides, are summarized. Second, the accumulation of heavy metals in crops as influenced by the plant characteristics and soil factors is analyzed. Then, the reducing strategies, including low-metal cultivar selection/breeding, physiological blocking, water management, and soil amendment are evaluated. Finally, the phytoremediation in terms of remediation efficiency and applicability is discussed. Therefore, this review provides helpful guidance for better selection and development of the control/remediation technologies for heavy metal-contaminated agricultural soils.

Wee‐Jun Ong, L. Tan, Y. Ng et al.

Chemical Reviews • 2016

As a fascinating conjugated polymer, graphitic carbon nitride (g-C3N4) has become a new research hotspot and drawn broad interdisciplinary attention as a metal-free and visible-light-responsive photocatalyst in the arena of solar energy conversion and environmental remediation. This is due to its appealing electronic band structure, high physicochemical stability, and "earth-abundant" nature. This critical review summarizes a panorama of the latest progress related to the design and construction of pristine g-C3N4 and g-C3N4-based nanocomposites, including (1) nanoarchitecture design of bare g-C3N4, such as hard and soft templating approaches, supramolecular preorganization assembly, exfoliation, and template-free synthesis routes, (2) functionalization of g-C3N4 at an atomic level (elemental doping) and molecular level (copolymerization), and (3) modification of g-C3N4 with well-matched energy levels of another semiconductor or a metal as a cocatalyst to form heterojunction nanostructures. The construction and characteristics of each classification of the heterojunction system will be critically reviewed, namely metal-g-C3N4, semiconductor-g-C3N4, isotype g-C3N4/g-C3N4, graphitic carbon-g-C3N4, conducting polymer-g-C3N4, sensitizer-g-C3N4, and multicomponent heterojunctions. The band structures, electronic properties, optical absorption, and interfacial charge transfer of g-C3N4-based heterostructured nanohybrids will also be theoretically discussed based on the first-principles density functional theory (DFT) calculations to provide insightful outlooks on the charge carrier dynamics. Apart from that, the advancement of the versatile photoredox applications toward artificial photosynthesis (water splitting and photofixation of CO2), environmental decontamination, and bacteria disinfection will be presented in detail. Last but not least, this comprehensive review will conclude with a summary and some invigorating perspectives on the challenges and future directions at the forefront of this research platform. It is anticipated that this review can stimulate a new research doorway to facilitate the next generation of g-C3N4-based photocatalysts with ameliorated performances by harnessing the outstanding structural, electronic, and optical properties for the development of a sustainable future without environmental detriment.

S. Narayanasamy, E. Muller, A. Sheik et al.

Microbial Biotechnology • 2015

Biological wastewater treatment plants harbour diverse and complex microbial communities which prominently serve as models for microbial ecology and mixed culture biotechnological processes. Integrated omic analyses (combined metagenomics, metatranscriptomics, metaproteomics and metabolomics) are currently gaining momentum towards providing enhanced understanding of community structure, function and dynamics in situ as well as offering the potential to discover novel biological functionalities within the framework of Eco‐Systems Biology. The integration of information from genome to metabolome allows the establishment of associations between genetic potential and final phenotype, a feature not realizable by only considering single ‘omes’. Therefore, in our opinion, integrated omics will become the future standard for large‐scale characterization of microbial consortia including those underpinning biological wastewater treatment processes. Systematically obtained time and space‐resolved omic datasets will allow deconvolution of structure–function relationships by identifying key members and functions. Such knowledge will form the foundation for discovering novel genes on a much larger scale compared with previous efforts. In general, these insights will allow us to optimize microbial biotechnological processes either through better control of mixed culture processes or by use of more efficient enzymes in bioengineering applications.

Benay Akyon, E. Stachler, Na Wei et al.

Environmental Science & Technology • 2015

Treatment of produced water, i.e. wastewater from hydraulic fracturing, for reuse or final disposal is challenged by both high salinity and the presence of organic compounds. Organic compounds in produced water may foul physical-chemical treatment processes or support microbial corrosion, fouling, and sulfide release. Biological approaches have potential applications in produced water treatment, including reducing fouling of physical-chemical treatment processes and decreasing biological activity during produced water holding; however, conventional activated sludge treatments are intolerant of high salinity. In this study, a biofilm treatment approach using constructed microbial mats was evaluated for biodegradation performance, microbial community structure, and metabolic potential in both simulated and real produced water. Results demonstrated that engineered microbial mats are active at total dissolved solids (TDS) concentrations up to at least 100,000 mg/L, and experiments in real produced water showed a biodegradation capacity of 1.45 mg COD/gramwet-day at a TDS concentration of 91,351 mg/L. Additionally, microbial community and metagenomic analyses revealed an adaptive microbial community that shifted based upon the sample being treated and has the metabolic potential to degrade a wide array of contaminants, suggesting the potential of this approach to treat produced waters with varying composition.

Wen‐Wei Li, Hanqing Yu, Zhen He

Energy Environ. Sci. • 2013

Microbial fuel cells (MFCs) have been conceived and intensively studied as a promising technology to achieve sustainable wastewater treatment. However, doubts and debates arose in recent years regarding the technical and economic viability of this technology on a larger scale and in a real-world applications. Hence, it is time to think about and examine how to recalibrate this technology's role in a future paradigm of sustainable wastewater treatment. In the past years, many good ideas/approaches have been proposed and investigated for MFC application, but information is scattered. Various review papers were published on MFC configuration, substrates, electrode materials, separators and microbiology but there is lack of critical thinking and systematic analysis of MFC application niche in wastewater treatment. To systematically formulate a strategy of (potentially) practical MFC application and provide information to guide MFC development, this perspective has critically examined and discussed the problems and challenges for developing MFC technology, and identified a possible application niche whereby MFCs can be rationally incorporated into the treatment process. We propose integration of MFCs with other treatment technologies to form an MFC-centered treatment scheme based on thoroughly analyzing the challenges and opportunities, and discuss future efforts to be made for realizing sustainable wastewater treatment.

Xi Chen, Binyou Liao, Lei Cheng et al.

Applied Microbiology and Biotechnology • 2020

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), a novel β-coronavirus, is the main pathogenic agent of the rapidly spreading pneumonia called coronavirus disease 2019 (COVID-19). SARS-CoV-2 infects much more people, especially the elder population, around the world than other coronavirus, such as SARS-CoV and MERS-CoV, which is challenging current global public health system. Beyond the pathogenesis of SARS-CoV-2, microbial coinfection plays an important role in the occurrence and development of SARS-CoV-2 infection by raising the difficulties of diagnosis, treatment, prognosis of COVID-19, and even increasing the disease symptom and mortality. We summarize the coinfection of virus, bacteria and fungi with SARS-CoV-2, their effects on COVID-19, the reasons of coinfection, and the diagnosis to emphasize the importance of microbial coinfection in COVID-19. • Microbial coinfection is a nonnegligible factor in COVID-19. • Microbial coinfection exacerbates the processes of the occurrence, development and prognosis of COVID-19, and the difficulties of clinical diagnosis and treatment. • Different virus, bacteria, and fungi contributed to the coinfection with SARS-CoV-2.

Ailing Zhao, Jia-Zheng Sun, Yipin Liu

Frontiers in Cellular and Infection Microbiology • 2023

Bacterial biofilms are complex microbial communities encased in extracellular polymeric substances. Their formation is a multi-step process. Biofilms are a significant problem in treating bacterial infections and are one of the main reasons for the persistence of infections. They can exhibit increased resistance to classical antibiotics and cause disease through device-related and non-device (tissue) -associated infections, posing a severe threat to global health issues. Therefore, early detection and search for new and alternative treatments are essential for treating and suppressing biofilm-associated infections. In this paper, we systematically reviewed the formation of bacterial biofilms, associated infections, detection methods, and potential treatment strategies, aiming to provide researchers with the latest progress in the detection and treatment of bacterial biofilms.

L. Stadler, Jeseth Delgado Vela, Sunit Jain et al.

Microbial Biotechnology • 2017

In addition to removing organics and other nutrients, the microorganisms in wastewater treatment plants (WWTPs) biotransform many pharmaceuticals present in wastewater. The objective of this study was to examine the relationship between pharmaceutical biotransformation and biodiversity in WWTP bioreactor microbial communities and identify taxa and functional genes that were strongly associated with biotransformation. Dilution‐to‐extinction of an activated sludge microbial community was performed to establish cultures with a gradient of microbial biodiversity. Batch experiments were performed using the dilution cultures to determine biotransformation extents of several environmentally relevant pharmaceuticals. With this approach, because the communities were all established from the same original community, and using sequencing of the 16S rRNA and metatranscriptome, we identified candidate taxa and genes whose activity and transcript abundances associated with the extent of individual pharmaceutical biotransformation and were lost across the biodiversity gradient. Metabolic genes such as dehydrogenases, amidases and monooxygenases were significantly associated with pharmaceutical biotransformation, and five genera were identified whose activity significantly associated with pharmaceutical biotransformation. Understanding how biotransformation relates to biodiversity will inform the design of biological WWTPs for enhanced removal of chemicals that negatively impact environmental health.

Dadrasnia Arezoo, Usman Mohammed Maikudi, Lim Kang Tzin et al.

Environmental Pollution and Protection • 2017

Generation of wastewater is just unavoidable but its discharge into the environment is of great concern. Wastewater mainly comprised of any unwanted waste that could pollute our water system including sewage sludge, wastewater from domestic, industrial, dairy, fish canning and oil and gas industry. Since the early 1990s, microbial treatment processes have gained increasing attention due to its facility and high efficiency compared to conventional techniques. This paper focuses on the essential mechanisms involved in different microbial treatment techniques and special attention on the most recent challenges and developments will be highlighted in this review.

Tang Liu, Shufeng Liu, Maosheng Zheng et al.

PLOS ONE • 2016

Microbial communities of activated sludge (AS) play a key role in the performance of wastewater treatment processes. However, seasonal variability of microbial population in varying AS-based processes has been poorly correlated with operation of full-scale wastewater treatment systems (WWTSs). In this paper, significant seasonal variability of AS microbial communities in eight WWTSs located in the city of Guangzhou were revealed in terms of 16S rRNA-based Miseq sequencing. Furthermore, variation redundancy analysis (RDA) demonstrated that the microbial community compositions closely correlated with WWTS operation parameters such as temperature, BOD, NH4+-N and TN. Consequently, support vector regression models which reasonably predicted effluent BOD, SS and TN in WWTSs were established based on microbial community compositions. This work provided an alternative tool for rapid assessment on performance of full-scale wastewater treatment plants.

Ken Meerbergen, Maarten Van Geel, M. Waud et al.

MicrobiologyOpen • 2016

It is assumed that microbial communities involved in the biological treatment of different wastewaters having a different chemical composition harbor different microbial populations which are specifically adapted to the environmental stresses encountered in these systems. Yet, little is known about the composition of these microbial communities. Therefore, the aim of this study was to assess the microbial community composition over two seasons (winter and summer) in activated sludge from well‐operating textile wastewater treatment plants (WWTPs) in comparison with municipal WWTPs, and to explain observed differences by environmental variables. 454‐pyrosequencing generated 160 archaeal and 1645 bacterial species‐level Operational Taxonomic Units (OTUs), with lower observed richness in activated sludge from textile WWTPs compared to municipal WWTPs. The bacterial phyla Planctomycetes, Chloroflexi, Chlorobi, and Acidobacteria were more abundant in activated sludge samples from textile WWTPs, together with archaeal members of Thaumarchaeota. Nonmetric multidimensional scaling analysis of the microbial communities showed that microbial communities from textile and municipal WWTPs were significantly different, with a seasonal effect on archaea. Nitrifying and denitrifying bacteria as well as phosphate‐accumulation bacteria were more abundant in municipal WWTPs, while sulfate‐reducing bacteria were almost only detected in textile WWTPs. Additionally, microbial communities from textile WWTPs were more dissimilar than those of municipal WWTPs, possibly due to a wider diversity in environmental stresses to which microbial communities in textile WWTPs are subjected to. High salinity, high organic loads, and a higher water temperature were important potential variables driving the microbial community composition in textile WWTPs. This study provides a general view on the composition of microbial communities in activated sludge of textile WWTPs, and may provide novel insights for identifying key players performing important functions in the purification of textile wastewaters.

S. Bizzarro, M. Laine, M. Buijs et al.

Scientific Reports • 2016

Antibiotics are often used in the treatment of chronic periodontitis, which is a major cause of tooth loss. However, evidence in favour of a microbial indication for the prescription of antibiotics is lacking, which may increase the risk of the possible indiscriminate use of antibiotics and consequent, microbial resistance. Here, using an open-ended technique, we report the changes in the subgingival microbiome up to one year post-treatment of patients treated with basic periodontal therapy with or without antibiotics. Antibiotics resulted in a greater influence on the microbiome 3 months after therapy, but this difference disappeared at 6 months. Greater microbial diversity, specific taxa and certain microbial co-occurrences at baseline and not the use of antibiotics predicted better clinical treatment outcomes. Our results demonstrate the predictive value of specific subgingival bacterial profiles for the decision to prescribe antibiotics in the treatment of periodontitis, but they also indicate the need for alternative therapies based on ecological approaches.

Y. Zou, A. Jiang

Food Science and Technology • 2016

Effect of ultrasound treatment on carrot juice was investigated through measuring pH, electrical conductivity, viscosity, visual color, total soluble solids, total sugars, total carotenoids, ascorbic acid contents and microbial load. No significant effect (p>0.05) of ultrasound treatment on pH of carrot juice was observed. Electrical conductivity, viscosity and color values gradually increased (p<0.05) with treatment time increase. Total soluble solids, total sugars, total carotenoids and ascorbic acid contents of carrot juice were significantly improved (p<0.05) due to ultrasound treatment. Moreover, significant decrease (p<0.05) in microbial load of sonicated carrot juice was observed. Results from present study suggested that ultrasound treatment could improve quality and safety of carrot juice.

N. Shchegolkova, G. Krasnov, A. A. Belova et al.

Frontiers in Microbiology • 2016

Activated sludge (AS) plays a crucial role in the treatment of domestic and industrial wastewater. AS is a biocenosis of microorganisms capable of degrading various pollutants, including organic compounds, toxicants, and xenobiotics. We performed 16S rRNA gene sequencing of AS and incoming sewage in three wastewater treatment plants (WWTPs) responsible for processing sewage with different origins: municipal wastewater, slaughterhouse wastewater, and refinery sewage. In contrast to incoming wastewater, the taxonomic structure of AS biocenosis was found to become stable in time, and each WWTP demonstrated a unique taxonomic pattern. Most pathogenic microorganisms (Streptococcus, Trichococcus, etc.), which are abundantly represented in incoming sewage, were significantly decreased in AS of all WWTPs, except for the slaughterhouse wastewater. Additional load of bioreactors with influent rich in petroleum products and organic matter was associated with the increase of bacteria responsible for AS bulking and foaming. Here, we present a novel approach enabling the prediction of the metabolic potential of bacterial communities based on their taxonomic structures and MetaCyc database data. We developed a software application, XeDetect, to implement this approach. Using XeDetect, we found that the metabolic potential of the three bacterial communities clearly reflected the substrate composition. We revealed that the microorganisms responsible for AS bulking and foaming (most abundant in AS of slaughterhouse wastewater) played a leading role in the degradation of substrates such as fatty acids, amino acids, and other bioorganic compounds. Moreover, we discovered that the chemical, rather than the bacterial composition of the incoming wastewater was the main factor in AS structure formation. XeDetect (freely available: https://sourceforge.net/projects/xedetect) represents a novel powerful tool for the analysis of the metabolic capacity of bacterial communities. The tool will help to optimize bioreactor performance and avoid some most common technical problems.

Y. Salama, M. Chennaoui, A. Sylla et al.

Desalination and Water Treatment • 2016

AbstractA review concerning the definition, extraction, characterization, production, and functions of extracellular polymeric substances (EPS) of microbial aggregates in biological wastewater treatment reactors is given in this paper. EPS are a complex high-molecular-weight mixture of polymers excreted by microorganisms, produced from cell lysis and adsorbed organic matter from wastewater. The EPS fill and form the space between the biofilm constituents, e.g. prokaryotic and eukaryotic microorganisms which inhabit the aggregates. It seems that the EPS matrix may serve as a multipurpose functional element of microbial communities, including adhesion, structure, protection, recognition, and physiology. Due to the metabolic activity of the cells, gradients develop and create different habitats within small distances, allowing a wide variety of organisms to settle and grow in the aggregate. As many of these organisms produce their specific EPS, it is not surprising that an extremely wide variety of microbial...

Rajbir Singh, Sandeep Chandrashekharappa, S. R. Bodduluri et al.

Nature Communications • 2019

The importance of gut microbiota in human health and pathophysiology is undisputable. Despite the abundance of metagenomics data, the functional dynamics of gut microbiota in human health and disease remain elusive. Urolithin A (UroA), a major microbial metabolite derived from polyphenolics of berries and pomegranate fruits displays anti-inflammatory, anti-oxidative, and anti-ageing activities. Here, we show that UroA and its potent synthetic analogue (UAS03) significantly enhance gut barrier function and inhibit unwarranted inflammation. We demonstrate that UroA and UAS03 exert their barrier functions through activation of aryl hydrocarbon receptor (AhR)- nuclear factor erythroid 2–related factor 2 (Nrf2)-dependent pathways to upregulate epithelial tight junction proteins. Importantly, treatment with these compounds attenuated colitis in pre-clinical models by remedying barrier dysfunction in addition to anti-inflammatory activities. Cumulatively, the results highlight how microbial metabolites provide two-pronged beneficial activities at gut epithelium by enhancing barrier functions and reducing inflammation to protect from colonic diseases. Urolithins are microbial metabolites derived from food polyphenols. Here, Singh et al. show that urolithin A and a synthetic analogue enhance gut barrier function via Nrf2-dependent pathways and mitigate inflammation and colitis in mice, highlighting a potential application for inflammatory bowel diseases.

Jianhua Guo, Yongzhen Peng, B. Ni et al.

Microbial Cell Factories • 2015

BackgroundAnaerobic digestion has been widely applied to treat the waste activated sludge from biological wastewater treatment and produce methane for biofuel, which has been one of the most efficient solutions to both energy crisis and environmental pollution challenges. Anaerobic digestion sludge contains highly complex microbial communities, which play crucial roles in sludge treatment. However, traditional approaches based on 16S rRNA amplification or fluorescent in situ hybridization cannot completely reveal the whole microbial community structure due to the extremely high complexity of the involved communities. In this sense, the next-generation high-throughput sequencing provides a powerful tool for dissecting microbial community structure and methane-producing pathways in anaerobic digestion.ResultsIn this work, the metagenomic sequencing was used to characterize microbial community structure of the anaerobic digestion sludge from a full-scale municipal wastewater treatment plant. Over 3.0 gigabases of metagenomic sequence data were generated with the Illumina HiSeq 2000 platform. Taxonomic analysis by MG-RAST server indicated that overall bacteria were dominant (~93%) whereas a considerable abundance of archaea (~6%) were also detected in the anaerobic digestion sludge. The most abundant bacterial populations were found to be Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria. Key microorganisms and related pathways involved in methanogenesis were further revealed. The dominant proliferation of Methanosaeta and Methanosarcina, together with the functional affiliation of enzymes-encoding genes (acetate kinase (AckA), phosphate acetyltransferase (PTA), and acetyl-CoA synthetase (ACSS)), suggested that the acetoclastic methanogenesis is the dominant methanogenesis pathway in the full-scale anaerobic digester.ConclusionsIn short, the metagenomic sequencing study of this work successfully dissected the detail microbial community structure and the dominated methane-producing pathways of a full-scale anaerobic digester. The knowledge garnered would facilitate to develop more efficient full-scale anaerobic digestion systems to achieve high-rate waste sludge treatment and methane production.

F. Ju, Frankie T. K. Lau, Tong Zhang

Environmental Science &amp; Technology • 2017

Understanding the influences of biotic and abiotic factors on microbial community structure and methanogenesis are important for its engineering and ecological significance. In this study, four biogas digesters were supplied with the same inoculum and feeding sludge but operated at different sludge retention time (7 to 16 days) and organic loading rates for 90 days to determine the relative influence of biotic and environmental factors on the microbial community assembly and methanogenic performance. Despite different operational parameters, all digester communities were dominated by Bacteroidales, Clostridiales, and Thermotogales and followed the same trend of population dynamics over time. Network and multivariate analyses suggest that deterministic factors, including microbial competition (involving Bacteroidales spp.), niche differentiation (e.g., within Clostridiales spp.), and periodic microbial immigration (from feed sludge), are the key drivers of microbial community assembly and dynamics. A yet-to-be-cultured phylotype of Bacteroidales (GenBank ID: GU389558.1 ) is implicated as a strong competitor for carbohydrates. Moreover, biogas-producing rate and methane content were significantly related with the abundances of functional populations rather than any operational or physicochemical parameter, revealing microbiological mediation of methanogenesis. Combined, this study enriches our understandings of biological and environmental drivers of microbial community assembly and performance in anaerobic digesters.

Bo Zhang, Xiang-yang Xu, Liang Zhu

Scientific Reports • 2017

To better understand the relationship between the environmental variables and microbial communities of activated sludge, we took winter samples from different biological treatment units (anaerobic, oxic, etc) from the WWTP’s of a number of Chinese cities. Differences in influent organic components and activated sludge microbial communities were identified by gas chromatography-mass spectrometry and high-throughput sequencing technology, respectively. Liquid nitrogen grinding pretreatment of samples was found to aid in the obtaining of a more bio-diversified sample. Influent type and dissolved oxygen concentration influenced the activated sludge microbial community structure. Nitrospira, Caldilineaceae and Anaerolineaceae were highly related to domestic wastewater treatment systems, whereas Thauera was the most abundant putative refractory aromatic hydrocarbon decomposer found in industrial wastewater treatment systems. Within the influent composition, we speculate that Thauera, Macellibacteroides and Desulfomicrobium are the key functional genera of the anaerobic environment of the textile dyeing industry wastewater treatment systems, whilst Thauera and Thiobacillus are key functional microbes in fine chemical wastewater treatment systems.

Zheng Ge, Zhen He

Environmental Science: Water Research &amp; Technology • 2016

Microbial fuel cells (MFCs) have been intensively studied at a bench scale and the further development of this technology requires system scaling up and understanding of their performance under non-laboratory conditions. In this study, a 200 L modularized MFC system consisting of 96 MFC modules was developed and operated in a local wastewater treatment plant for treating primary effluent. During more than 300 days' operation, the MFC system removed more than 75% of the total chemical oxygen demand and 90% of the suspended solids, despite significant fluctuations in treatment performance affected by wastewater quality and operational factors. It achieved 68% removal of ammonia nitrogen, but phosphorous and the nitrate accumulated due to nitrification needs further disposal. The frequency of the catholyte recirculation exerted a strong effect on the energy consumption of the MFC system. Through both parallel and serial electric connections, the MFC system generated power of ∼200 mW that was extracted by a power management system to drive a 60 W DC pump for catholyte recirculation. Over 60% of the material cost of the MFCs was due to the cation exchange membrane, and the capital cost of the MFC system could be comparable to that of small wastewater treatment facilities. The results of this study encourage the further development of MFC technology with reduced costs and improved performance towards sustainable wastewater treatment.

Heyang Yuan, Yang Hou, I. Abu-Reesh et al.

Materials Horizons • 2016

Microbial fuel cells (MFCs) as an energy-efficient wastewater treatment technology have attracted increasing interest in the past decade. Cathode catalysts for the oxygen reduction reaction (ORR) present a major challenge for the practical applications of MFCs. An ideal cathode catalyst should be scalable, durable, and cost-effective. A variety of non-precious metal catalysts have been developed for MFC applications, including carbon-based catalysts, metal-based catalysts, metal–carbon hybrids, metal–nitrogen–carbon complexes, and biocatalysts. This paper comprehensively reviews these materials with emphasis on their synthesis, performance, durability, and cost. It is anticipated that insights offered in this review could facilitate the development of ORR catalysts for MFC applications towards energy-efficient wastewater treatment.

Liguan Li, A. Dechesne, Zhiming He et al.

Environmental Science &amp; Technology Letters • 2018

Wastewater treatment plants (WWTPs) have been suggested as reservoirs and sources of antibiotic resistance genes (ARGs) in the environment. In a WWTP ecosystem, human enteric and environmental bacteria are mixed and exposed to pharmaceutical residues, potentially favoring genetic exchange and thus ARG transmission. However, the contribution of microbial communities in WWTPs to ARG dissemination remains poorly understood. Here, we examined for the first time plasmid permissiveness of an activated sludge microbial community by utilizing an established fluorescent bioreporter system. The activated sludge microbial community was challenged in standardized filter matings with one of three multidrug resistance plasmids (pKJK5, pB10, and RP4) harbored by Escherichia coli or Pseudomonas putida. Different donor–plasmid combinations had distinct transfer frequencies, ranging from 3 to 50 conjugation events per 100000 cells of the WWTP microbial community. In addition, transfer was observed to a broad phylogenetic r...

Kunichika Nakamiya, S. Hashimoto, Hiroyasu Ito et al.

Journal of Bioscience and Bioengineering • 2005

In this study, we investigated the use of microbes to degrade and remove bis (2-ethylhexyl) phthalate (DEHP), a common plasticizer and a suspected endocrine disruptor, exuding from polyvinyl chloride. Four species of bacteria that utilize DEHP as their sole carbon source were isolated from garden soil, one of which, strain NK0301, was markedly more efficient than the others in degrading DEHP and was chosen for further studies. Strain NK0301 was a coryneform bacterium (1.5x1.0 microm) identified as Mycobacterium sp. from its 16S rDNA sequencing homology. It readily degraded DEHP to two major products determined by gas chromatography/mass spectrometry to be 2-ethylhexanol and 1,2-benzenedicarboxylic acid. Other phthalate esters, suspected of being endocrine disruptors, were also tested and all except two could be utilized by strain NK0301 as their sole source of carbon. When strain NK0301 was cultivated on polyvinyl chloride sheets containing DEHP as the plasticizer, it removed up to 90% of DEHP in 3 d. Following this treatment, the polyvinyl chloride sheets did not exude DEHP to artificial saliva.

Raina M. Miller, George M. Singer, J. D. Rosen et al.

Environmental Science &amp; Technology • 1988

Using the radiolabeled model pollutants 2,4-dichlorophenol (DCP) and 2,4,5-trichlorophenol (TCP) the authors demonstrated that the brief UV (300-nm) photolysis greatly facilitates the removal of the two chlorophenols from sewage through accelerated mineralization and binding of polar products. The addition of 0.1 M H/sub 2/O/sub 2/ strongly accelerated the photolysis process resulting in the half-lives of 1.68 and 0.87 min for DCP and TCP, respectively. In natural sunlight, half-lives of the chlorophenols were less than 1 day when H/sub 2/O/sub 2/ was present. During 4 days of incubation in activated sewage sludge, only 3% of unphotolyzed DCP and 1% of unphotolyzed TCP were mineralized. Mineralization rose to 79 and 59%, respectively, after photolysis in the presence of H/sub 2/O/sub 2/. Photolysis without H/sub 2/O/sub 2/ resulted in removal of chlorophenols from solution chiefly by binding. Increased mineralization and binding were observed also upon incubation of photolyzed chlorophenols in soil. Disruption of carbon-halogen bonds by brief photolysis followed by traditional biological effluent treatment offers an alternative to activated charcoal treatment for removal of xenobiotics from industrial effluents.

Maik Luu, Zeno Riester, Adrian Baldrich et al.

Nature Communications • 2021

Emerging data demonstrate that the activity of immune cells can be modulated by microbial molecules. Here, we show that the short-chain fatty acids (SCFAs) pentanoate and butyrate enhance the anti-tumor activity of cytotoxic T lymphocytes (CTLs) and chimeric antigen receptor (CAR) T cells through metabolic and epigenetic reprograming. We show that in vitro treatment of CTLs and CAR T cells with pentanoate and butyrate increases the function of mTOR as a central cellular metabolic sensor, and inhibits class I histone deacetylase activity. This reprogramming results in elevated production of effector molecules such as CD25, IFN-γ and TNF-α, and significantly enhances the anti-tumor activity of antigen-specific CTLs and ROR1-targeting CAR T cells in syngeneic murine melanoma and pancreatic cancer models. Our data shed light onto microbial molecules that may be used for enhancing cellular anti-tumor immunity. Collectively, we identify pentanoate and butyrate as two SCFAs with therapeutic utility in the context of cellular cancer immunotherapy. The activity of immune cells can be regulated by the microbiome. Here, the authors show that the fatty acids pentanoate and butyrate—normally released by the microbiome—increase the anti-tumour activity of cytotoxic T lymphocytes and chimeric antigen receptor T cells through metabolic and epigenetic reprogramming.

I. Chang, J. Im, G. Cho

Sustainability • 2016

Soil treatment and improvement is commonly performed in the field of geotechnical engineering. Methods and materials to achieve this such as soil stabilization and mixing with cementitious binders have been utilized in engineered soil applications since the beginning of human civilization. Demand for environment-friendly and sustainable alternatives is currently rising. Since cement, the most commonly applied and effective soil treatment material, is responsible for heavy greenhouse gas emissions, alternatives such as geosynthetics, chemical polymers, geopolymers, microbial induction, and biopolymers are being actively studied. This study provides an overall review of the recent applications of biopolymers in geotechnical engineering. Biopolymers are microbially induced polymers that are high-tensile, innocuous, and eco-friendly. Soil–biopolymer interactions and related soil strengthening mechanisms are discussed in the context of recent experimental and microscopic studies. In addition, the economic feasibility of biopolymer implementation in the field is analyzed in comparison to ordinary cement, from environmental perspectives. Findings from this study demonstrate that biopolymers have strong potential to replace cement as a soil treatment material within the context of environment-friendly construction and development. Moreover, continuing research is suggested to ensure performance in terms of practical implementation, reliability, and durability of in situ biopolymer applications for geotechnical engineering purposes.

D. Speth, Michiel H. in ‘t Zandt, Simon Guerrero-Cruz et al.

Nature Communications • 2016

Partial-nitritation anammox (PNA) is a novel wastewater treatment procedure for energy-efficient ammonium removal. Here we use genome-resolved metagenomics to build a genome-based ecological model of the microbial community in a full-scale PNA reactor. Sludge from the bioreactor examined here is used to seed reactors in wastewater treatment plants around the world; however, the role of most of its microbial community in ammonium removal remains unknown. Our analysis yielded 23 near-complete draft genomes that together represent the majority of the microbial community. We assign these genomes to distinct anaerobic and aerobic microbial communities. In the aerobic community, nitrifying organisms and heterotrophs predominate. In the anaerobic community, widespread potential for partial denitrification suggests a nitrite loop increases treatment efficiency. Of our genomes, 19 have no previously cultivated or sequenced close relatives and six belong to bacterial phyla without any cultivated members, including the most complete Omnitrophica (formerly OP3) genome to date. ANaerobic AMMonium OXidation (ANAMMOX) combined with partial nitritation has been adopted for removal of ammonium from wastewater. Here, Speth et al. describe the bacterial metagenome of a partial-nitritation/anammox (PNA) reactor, and provide 23 draft genomes, 19 of which were previously uncharacterized/sequenced/cultivated.

M. Alam, A. Fakhru’l-Razi, A. H. Molla

Journal of Environmental Engineering and Science • 2003

The evaluation of cheap carbon sources (co-substrate) and process conditions for microbial treatment of domestic wastewater sludge (DWS) was investigated using a liquid state bioconversion (LSB) laboratory scale process. Six cheap carbon sources were used: wheat flour (WF), rice flour (RF), corn flour (CF), sago starch (SS), cassava starch (CS), and commercial sugar (S). Process conditions such as co-substrate(s) concentration, temperature, initial pH, and inoculum size were optimized in terms of dry filter cake (DFC) production, removal of total suspended solids (TSS), turbidity (optical density against distilled water, 660 nm), and chemical oxygen demand (COD) in supernatant. The results obtained indicated that sludge containing wheat flour as a carbon source was a better co-substrate for microbial growth, with significant utilization for minimizing the dissolved and suspended materials in sludge. The optimized parameters for fungal treatment of DWS obtained were 1.5–2% (w/w) of WF concentration, temper...

N. Vaziri, Ying-yong Zhao, M. Pahl

Nephrology Dialysis Transplantation • 2016

Chronic kidney disease (CKD) results in systemic inflammation and oxidative stress which play a central role in CKD progression and its adverse consequences. Although many of the causes and consequences of oxidative stress and inflammation in CKD have been extensively explored, little attention had been paid to the intestine and its microbial flora as a potential source of these problems. Our recent studies have revealed significant disruption of the colonic, ileal, jejunal and gastric epithelial tight junction in different models of CKD in rats. Moreover, the disruption of the epithelial barrier structure and function found in uremic animals was replicated in cultured human colonocytes exposed to uremic human plasma in vitro We have further found significant changes in the composition and function of colonic bacterial flora in humans and animals with advanced CKD. Together, uremia-induced impairment of the intestinal epithelial barrier structure and function and changes in composition of the gut microbiome contribute to the systemic inflammation and uremic toxicity by accommodating the translocation of endotoxin, microbial fragments and other noxious luminal products in the circulation. In addition, colonic bacteria are the main source of several well-known pro-inflammatory uremic toxins such as indoxyl sulfate, p-cresol sulfate, trimethylamine-N-oxide and many as-yet unidentified retained compounds in end-stage renal disease patients. This review is intended to provide an overview of the effects of CKD on the gut microbiome and intestinal epithelial barrier structure and their role in the pathogenesis of systemic inflammation and uremic toxicity. In addition, potential interventions aimed at mitigating these abnormalities are briefly discussed.

Y. Nakamura, Masakazu Daidai, F. Kobayashi

Water Science and Technology • 2004

Treatment methods comprising ozonolysis and microbial treatment of lignin discharged from the pulp manufacture industries were investigated by using a sulfite pulp wastewater and a lignin model compound, i.e. sodium lignosulfonate. Dynamic behaviors for the formations of intermediate derivatives such as muconic acid, maleic acid, and oxalic acid produced from the ozonolysis of sulfite pulp wastewater were observed from data of UV absorption at 280 nm by a spectrophotometer and at 210 nm by high performance liquid chromatography. The microorganisms that were isolated by the enrichment culture method were used to degrade the organic acids such as oxalic acid and acetic acid. Time courses of biological degradation of these organic acids indicated diauxic growth, which was found in a culture with mixed substrates. In the treatment of sodium lignosulfonate, the ozonolysis and microbial treatment using activated sludge converted sodium lignosulfonate into carbon dioxide and water almost completely.

G. Béchard, H. Yamazaki, W. Douglas Gould et al.

Journal of Environmental Quality • 1994

A mixed aerobic-anaerobic microbial treatment process was developed previously for acid mine drainage (AMD) using straw as a substrate. The process was effective only if AMD was supplemented with sucrose. The present study was conducted to determine which, if any, of three cellulosic materials could sustain the microbial treatment of AMD without the addition of a sucrose amendment and to determine the effect of the retention time on the performance of the reactorsThe performance of small reactors that treated simulated AMD in the continuous mode was evaluated using alfalfa (Medicaga sativa L.) hay, timothy (Phleum pratense L.) hay, and straw with a 5-d retention time

Julie Woodfield, A. Argent

Journal of Tropical Pediatrics • 2008

The World Health Organization (WHO) has produced guidelines for the management of common illnesses in hospitals with limited resources. This series reviews the scientific evidence behind WHO’s recommendations. The WHO guidelines, and more reviews are available at http://www.ichrc.org This review addresses the question: What is the most appropriate anti-microbial treatment for tuberculous meningitis? The WHO Pocketbook of Hospital Care for Children recommends as the optimal treatment regimen, where there is no drug resistance:

P. Basso, N. Câmara, Helioswilton Sales-Campos

Frontiers in Pharmacology • 2019

Inflammatory bowel disease (IBD) is a group of multifactorial and inflammatory infirmities comprised of two main entities: Ulcerative colitis (UC) and Crohn’s disease (CD). Classic strategies to treat IBD are focused on decreasing inflammation besides inducing and extending disease remission. However, these approaches have several limitations such as low responsiveness, excessive immunosuppression, and refractoriness. Despite the multifactorial causality of IBD, immune disturbances and intestinal dysbiosis have been suggested as the central players in disease pathogenesis. Hence, therapies aiming at modulating intestinal microbial composition may represent a promising strategy in IBD control. Fecal microbiota transplantation (FMT) and probiotics have been explored as promising candidates to reestablish microbial balance in several immune-mediated diseases such as IBD. These microbial-based therapies have demonstrated the ability to reduce both the dysbiotic environment and production of inflammatory mediators, thus inducing remission, especially in UC. Despite these promising results, there is still no consensus on the relevance of such treatments in IBD as a potential clinical strategy. Thus, this review aims to critically review and describe the use of FMT and probiotics to treat patients with IBD.

Guangxue Wu, Qidong Yin

npj Clean Water • 2020

Biological wastewater treatment has developed for more than 100 years, and new concepts about future wastewater treatment have been put forward worldwide. Environmental biotechnology is still the key contributor for wastewater management. However, these biotechnologies are facing challenges due to stringent discharging standards and the removal of emerging pollutants. Here, a new concept of microbial niche nexus sustaining biological wastewater treatment was proposed, which can achieve the efficient removal of known and unknown pollutants through tuning microbial niches to accommodate diverse microbial communities. Microbial niche nexus could be applied to solve emerging challenges besides infrastructure construction. In addition, the co-enrichment of r/K-strategists and the establishment of microenvironments with substrate gradients could be adopted for the design and operation of biological wastewater treatment processes. Finally, future development and perspectives were presented through aspects of microbial enrichment, microbial function and metabolism identification, system design and operation control, and new technology development and application.